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/* prefs.c *%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% * * Part of: SExtractor * * Author: E.BERTIN (IAP) * * Contents: Functions to handle the configuration file. * * Last modify: 22/09/2010 * *%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% */ #ifdef HAVE_CONFIG_H #include "config.h" #endif #include <ctype.h> #include <math.h> #include <stdio.h> #include <stdlib.h> #include <string.h> #include <unistd.h> #if defined(USE_THREADS) \ && (defined(__APPLE__) || defined(FREEBSD) || defined(NETBSD)) /* BSD, Apple */ #include <sys/types.h> #include <sys/sysctl.h> #elif defined(USE_THREADS) && defined(HAVE_MPCTL) /* HP/UX */ #include <sys/mpctl.h> #endif #include "define.h" #include "globals.h" #include "prefs.h" #include "preflist.h" #include "fits/fitscat.h" /********************************* dumpprefs ********************************/ /* Print the default preference parameters. */ void dumpprefs(int state) { char **dp; dp = default_prefs; while (**dp) if (**dp != '*') printf("%s\n",*(dp++)); else if (state) printf("%s\n",*(dp++)+1); else dp++; return; } /********************************* readprefs ********************************/ /* Read a configuration file in ``standard'' format (see the SExtractor documentation) */ void readprefs(char *filename, char **argkey, char **argval, int narg) { FILE *infile; char *cp, str[MAXCHARL], *keyword, *value, **dp; int i, ival, nkey, warn, argi, flagc, flagd, flage, flagz; float dval; #ifndef NO_ENVVAR static char value2[MAXCHARL],envname[MAXCHAR]; char *dolpos; #endif if ((infile = fopen(filename,"r")) == NULL) { flage = 1; warning(filename, " not found, using internal defaults"); } else flage = 0; /*Build the keyword-list from pkeystruct-array */ for (i=0; key[i].name[0]; i++) strcpy(keylist[i], key[i].name); keylist[i][0] = '\0'; /*Scan the configuration file*/ argi=0; flagc = 0; flagd = 1; dp = default_prefs; for (warn=0;;) { if (flagd) { if (**dp) { if (**dp=='*') strcpy(str, *(dp++)+1); else strcpy(str, *(dp++)); } else flagd = 0; } if (!flagc && !flagd) if (flage || !fgets(str, MAXCHARL, infile)) flagc=1; if (flagc) { if (argi<narg) { sprintf(str, "%s %s", argkey[argi], argval[argi]); argi++; } else break; } keyword = strtok(str, notokstr); if (keyword && keyword[0]!=0 && keyword[0]!=(char)'#') { if (warn>=10) error(EXIT_FAILURE, "*Error*: No valid keyword found in ", filename); nkey = findkeys(keyword, keylist, FIND_STRICT); if (nkey!=RETURN_ERROR) { value = strtok((char *)NULL, notokstr); #ifndef NO_ENVVAR /*------ Expansion of environment variables (preceded by '$') */ if (value && (dolpos=strchr(value, '$'))) { int nc; char *valuet,*value2t, *envval; value2t = value2; valuet = value; while (dolpos) { while (valuet<dolpos) *(value2t++) = *(valuet++); /* verbatim copy before '$' */ if (*(++valuet) == (char)'{') valuet++; strncpy(envname, valuet, nc=strcspn(valuet,"}/:\"\'\\")); *(envname+nc) = (char)'\0'; if (*(valuet+=nc) == (char)'}') valuet++; if (!(envval=getenv(envname))) error(EXIT_FAILURE, "Environment variable not found: ", envname); while(*envval) /* Copy the ENV content */ *(value2t++) = *(envval++); while(*valuet && *valuet!=(char)'$')/* Continue verbatim copy */ *(value2t++) = *(valuet++); if (*valuet) dolpos = valuet; else { dolpos = NULL; *value2t = (char)'\0'; } } value = value2; } #endif switch(key[nkey].type) { case P_FLOAT: if (!value || value[0]==(char)'#') error(EXIT_FAILURE, keyword," keyword has no value!"); dval = atof(value); if (dval>=key[nkey].dmin && dval<=key[nkey].dmax) *(double *)(key[nkey].ptr) = dval; else error(EXIT_FAILURE, keyword," keyword out of range"); break; case P_INT: if (!value || value[0]==(char)'#') error(EXIT_FAILURE, keyword," keyword has no value!"); ival = atoi(value); if (ival>=key[nkey].imin && ival<=key[nkey].imax) *(int *)(key[nkey].ptr) = ival; else error(EXIT_FAILURE, keyword, " keyword out of range"); break; case P_STRING: if (!value || value[0]==(char)'#') error(EXIT_FAILURE, keyword," string is empty!"); strcpy((char *)key[nkey].ptr, value); break; case P_BOOL: if (!value || value[0]==(char)'#') error(EXIT_FAILURE, keyword," keyword has no value!"); if ((cp = strchr("yYnN", (int)value[0]))) *(int *)(key[nkey].ptr) = (tolower((int)*cp)=='y')?1:0; else error(EXIT_FAILURE, keyword, " value must be Y or N"); break; case P_KEY: if (!value || value[0]==(char)'#') error(EXIT_FAILURE, keyword," keyword has no value!"); if ((ival = findkeys(value, key[nkey].keylist,FIND_STRICT)) != RETURN_ERROR) *(int *)(key[nkey].ptr) = ival; else error(EXIT_FAILURE, keyword, " set to an unknown keyword"); break; case P_BOOLLIST: for (i=0; i<MAXLIST&&value&&value[0]!=(char)'#'; i++) { if (i>=key[nkey].nlistmax) error(EXIT_FAILURE, keyword, " has too many members"); if ((cp = strchr("yYnN", (int)value[0]))) ((int *)(key[nkey].ptr))[i] = (tolower((int)*cp)=='y')?1:0; else error(EXIT_FAILURE, keyword, " value must be Y or N"); value = strtok((char *)NULL, notokstr); } if (i<key[nkey].nlistmin) error(EXIT_FAILURE, keyword, " list has not enough members"); *(key[nkey].nlistptr) = i; break; case P_INTLIST: for (i=0; i<MAXLIST&&value&&value[0]!=(char)'#'; i++) { if (i>=key[nkey].nlistmax) error(EXIT_FAILURE, keyword, " has too many members"); ival = strtol(value, NULL, 0); if (ival>=key[nkey].imin && ival<=key[nkey].imax) ((int *)key[nkey].ptr)[i] = ival; else error(EXIT_FAILURE, keyword, " keyword out of range"); value = strtok((char *)NULL, notokstr); } if (i<key[nkey].nlistmin) error(EXIT_FAILURE, keyword, " list has not enough members"); *(key[nkey].nlistptr) = i; break; case P_FLOATLIST: for (i=0; i<MAXLIST&&value&&value[0]!=(char)'#'; i++) { if (i>=key[nkey].nlistmax) error(EXIT_FAILURE, keyword, " has too many members"); dval = atof(value); if (dval>=key[nkey].dmin && dval<=key[nkey].dmax) ((double *)key[nkey].ptr)[i] = dval; else error(EXIT_FAILURE, keyword, " keyword out of range"); value = strtok((char *)NULL, notokstr); } if (i<key[nkey].nlistmin) error(EXIT_FAILURE, keyword, " list has not enough members"); *(key[nkey].nlistptr) = i; break; case P_KEYLIST: for (i=0; i<MAXLIST && value && value[0]!=(char)'#'; i++) { if (i>=key[nkey].nlistmax) error(EXIT_FAILURE, keyword, " has too many members"); if ((ival = findkeys(value, key[nkey].keylist, FIND_STRICT)) != RETURN_ERROR) ((int *)(key[nkey].ptr))[i] = ival; else error(EXIT_FAILURE, keyword, " set to an unknown keyword"); value = strtok((char *)NULL, notokstr); } if (i<key[nkey].nlistmin) error(EXIT_FAILURE, keyword, " list has not enough members"); *(key[nkey].nlistptr) = i; break; case P_STRINGLIST: if (!value || value[0]==(char)'#') { value = ""; flagz = 1; } else flagz = 0; for (i=0; i<MAXLIST && value && value[0]!=(char)'#'; i++) { if (i>=key[nkey].nlistmax) error(EXIT_FAILURE, keyword, " has too many members"); free(((char **)key[nkey].ptr)[i]); QMALLOC(((char **)key[nkey].ptr)[i], char, MAXCHAR); strcpy(((char **)key[nkey].ptr)[i], value); value = strtok((char *)NULL, notokstr); } if (i<key[nkey].nlistmin) error(EXIT_FAILURE, keyword, " list has not enough members"); *(key[nkey].nlistptr) = flagz?0:i; break; default: error(EXIT_FAILURE, "*Internal ERROR*: Type Unknown", " in readprefs()"); break; } key[nkey].flag = 1; } else { warning(keyword, " keyword unknown"); warn++; } } } for (i=0; key[i].name[0]; i++) if (!key[i].flag) error(EXIT_FAILURE, key[i].name, " configuration keyword missing"); if (!flage) fclose(infile); return; } /********************************** findkeys **********************************/ /* find an item within a list of keywords, SExtractor version. */ int findkeys(char *str, char keyw[][32], int mode) { int i; for (i=0; keyw[i][0]; i++) if (!cistrcmp(str, keyw[i], mode)) return i; return RETURN_ERROR; } /******************************* cistrcmp ***********************************/ /* case-insensitive strcmp. */ int cistrcmp(char *cs, char *ct, int mode) { int i, diff; if (mode) { for (i=0; cs[i]&&ct[i]; i++) if ((diff=tolower((int)cs[i])-tolower((int)ct[i]))) return diff; } else { for (i=0; cs[i]||ct[i]; i++) if ((diff=tolower((int)cs[i])-tolower((int)ct[i]))) return diff; } return 0; } /********************************* preprefs **********************************/ /* Set number of threads and endianity. */ void preprefs() { unsigned short ashort=1; #ifdef USE_THREADS int nproc; #endif /* Test if byteswapping will be needed */ bswapflag = *((char *)&ashort); /* Multithreading */ #ifdef USE_THREADS if (!prefs.nthreads) { /*-- Get the number of processors for parallel builds */ /*-- See, e.g. http://ndevilla.free.fr/threads */ nproc = -1; #if defined(_SC_NPROCESSORS_ONLN) /* AIX, Solaris, Linux */ nproc = (int)sysconf(_SC_NPROCESSORS_ONLN); #elif defined(_SC_NPROCESSORS_CONF) nproc = (int)sysconf(_SC_NPROCESSORS_CONF); #elif defined(__APPLE__) || defined(FREEBSD) || defined(NETBSD) /* BSD, Apple */ { int mib[2]; size_t len; mib[0] = CTL_HW; mib[1] = HW_NCPU; len = sizeof(nproc); sysctl(mib, 2, &nproc, &len, NULL, 0); } #elif defined (_SC_NPROC_ONLN) /* SGI IRIX */ nproc = sysconf(_SC_NPROC_ONLN); #elif defined(HAVE_MPCTL) /* HP/UX */ nproc = mpctl(MPC_GETNUMSPUS_SYS, 0, 0); #endif if (nproc>0) prefs.nthreads = nproc; else { prefs.nthreads = 2; warning("Cannot find the number of CPUs on this system:", "NTHREADS defaulted to 2"); } } #ifndef HAVE_ATLAS_MP if (prefs.nthreads>1) warning("This executable has been compiled using a version of the ATLAS " "library without support for multithreading. ", "Performance will be degraded."); #endif #else if (prefs.nthreads != 1) { prefs.nthreads = 1; warning("NTHREADS != 1 ignored: ", "this build of " BANNER " is single-threaded"); } #endif } /********************************* useprefs **********************************/ /* Update various structures according to the prefs. */ void useprefs() { int i, margin, naper; char *str; /*-------------------------------- Images ----------------------------------*/ prefs.dimage_flag = (prefs.nimage_name>1); /*--------------------------------- ASSOC ----------------------------------*/ prefs.assoc_flag = FLAG(obj2.assoc) || FLAG(obj2.assoc_number); /*-------------------------------- Extracting ------------------------------*/ if (prefs.nthresh_type<2) prefs.thresh_type[1] = prefs.thresh_type[0]; /*-------------------------------- Deblending ------------------------------*/ prefs.deb_maxarea = (prefs.ext_minarea<MAXDEBAREA ? prefs.ext_minarea:MAXDEBAREA); /*-------------------------------- Astrometry ------------------------------*/ prefs.world_flag = FLAG(obj2.mxw) || FLAG(obj2.mamaposx) || FLAG(obj2.peakxw) || FLAG(obj2.winpos_xw) || FLAG(obj2.mx2w) || FLAG(obj2.win_mx2w) || FLAG(obj2.xw_prof) || FLAG(obj2.poserrmx2w_prof) || FLAG(obj2.poserr_mx2w) || FLAG(obj2.winposerr_mx2w) || FLAG(obj2.area_flagw) || FLAG(obj2.prof_flagw); /* Default astrometric settings */ strcpy(prefs.coosys, "ICRS"); prefs.epoch = 2000.0; /*-------------------------------- Photometry ------------------------------*/ /* Find the largest APERture-photometry vector */ if (FLAG(obj2.flux_aper)) { naper = prefs.flux_apersize; if (prefs.fluxerr_apersize>naper) naper = prefs.fluxerr_apersize; if (prefs.mag_apersize>naper) naper = prefs.mag_apersize; if (prefs.magerr_apersize>naper) naper = prefs.magerr_apersize; if (naper>prefs.naper) { warning("Not enough apertures provided in config.:\n", " some APER photometric values will remain blank "); naper = prefs.naper; } else prefs.naper = naper; } else naper = 0; /* To avoid gcc -Wall warnings */ /* Find the largest "minimum margin" necessary for apertures */ prefs.cleanmargin = 0; if (FLAG(obj2.vignet) && (margin=(prefs.vignetsize[1]+1)/2) > prefs.cleanmargin) prefs.cleanmargin = margin; if (FLAG(obj2.vigshift) && (margin=(prefs.vigshiftsize[1]+1)/2+3)>prefs.cleanmargin) prefs.cleanmargin = margin; if (FLAG(obj2.flux_aper)) for (i=0; i<naper; i++) if ((margin=(int)((prefs.apert[i]+1)/2)+1) > prefs.cleanmargin) prefs.cleanmargin = margin; /* Growth-curve flag */ if (FLAG(obj2.flux_growth) || FLAG(obj2.mag_growth) || FLAG(obj2.flux_radius) || FLAG(obj2.hl_radius) || FLAG(obj2.flux_growthstep) || FLAG(obj2.mag_growthstep)) prefs.growth_flag = 1; if (FLAG(obj2.flux_radius) && prefs.flux_radiussize) if (prefs.nflux_frac>prefs.flux_radiussize) prefs.nflux_frac = prefs.flux_radiussize; /*------------------------------- MASKing ----------------------------------*/ prefs.blank_flag = (prefs.mask_type!=MASK_NONE); /*--------------------------- SOM-fitting ----------------------------------*/ prefs.somfit_flag = FLAG(obj2.flux_somfit); /*------------------------------ Background --------------------------------*/ if (prefs.nbacksize<2) prefs.backsize[1] = prefs.backsize[0]; if (prefs.nbackfsize<2) prefs.backfsize[1] = prefs.backfsize[0]; if (prefs.nback_type<2) prefs.back_type[1] = prefs.back_type[0]; /*------------------------------ FLAG-images -------------------------------*/ prefs.nimaisoflag = (prefs.imaflag_size > prefs.imanflag_size) ? prefs.imaflag_size : prefs.imanflag_size; prefs.nimaflag = (prefs.nimaisoflag < prefs.nfimage_name) ? prefs.nimaisoflag : prefs.nfimage_name; /*----------------------------- CHECK-images -------------------------------*/ prefs.check_flag = 0; for (i=0; i<prefs.ncheck_type; i++) if (prefs.check_type[i] != CHECK_NONE) /* at least 1 is not NONE */ prefs.check_flag = 1; if (prefs.check_flag && prefs.ncheck_name!=prefs.ncheck_type) error(EXIT_FAILURE, "*Error*: CHECKIMAGE_NAME(s) and CHECKIMAGE_TYPE(s)", " are not in equal number"); /*---------------------------- PSF-fitting ---------------------------------*/ if (FLAG(obj2.flux_psf) ) { prefs.psf_flag = 1; prefs.dpsf_flag = (prefs.npsf_name>1); /*?*/ } if (prefs.check_flag) for (i=0; i<prefs.ncheck_type; i++) if (prefs.check_type[i] == CHECK_SUBPSFPROTOS || prefs.check_type[i] == CHECK_PSFPROTOS) prefs.psf_flag = 1; /*---------------------------- PC-fitting ----------------------------------*/ /* PC-fitting is possible only if a PSF file is loaded */ if (prefs.psf_flag) { prefs.pc_flag = FLAG(obj2.mx2_pc); if (prefs.check_flag) for (i=0; i<prefs.ncheck_type; i++) if (prefs.check_type[i] == CHECK_SUBPCPROTOS || prefs.check_type[i] == CHECK_PCPROTOS || prefs.check_type[i] == CHECK_PCOPROTOS) prefs.pc_flag = 1; } /*----------------------------- Model-fitting -------------------------------*/ if (prefs.check_flag) for (i=0; i<prefs.ncheck_type; i++) if (prefs.check_type[i] == CHECK_PROFILES || prefs.check_type[i] == CHECK_SUBPROFILES || prefs.check_type[i] == CHECK_SPHEROIDS || prefs.check_type[i] == CHECK_SUBSPHEROIDS || prefs.check_type[i] == CHECK_DISKS || prefs.check_type[i] == CHECK_SUBDISKS) prefs.prof_flag = 1; /*--------------------------- Adaptive class-star ---------------------------*/ if (prefs.seeing_fwhm == 0 && FLAG(obj2.sprob)) prefs.psf_flag = 1; /*-------------------------- Pattern-fitting -------------------------------*/ /* Profile-fitting is possible only if a PSF file is loaded */ if (prefs.check_flag) for (i=0; i<prefs.ncheck_type; i++) if (prefs.check_type[i] == CHECK_PATTERNS) prefs.pattern_flag = 1; /*----------------------------- WEIGHT-images ------------------------------*/ if (prefs.nweight_type<2) prefs.weight_type[1] = prefs.weight_type[0]; prefs.dweight_flag = (prefs.weight_type[0]!= WEIGHT_NONE); prefs.weight_flag = (prefs.weight_type[1]!= WEIGHT_NONE); if (prefs.dweight_flag || prefs.weight_flag) { /*-- Handle the default weight-threshold values */ if (prefs.nweight_thresh<2) for (i=2; --i >= prefs.nweight_thresh;) prefs.weight_thresh[i] = (prefs.weight_type[i]==WEIGHT_FROMWEIGHTMAP)? 0.0 : BIG; /*-- Check WEIGHT_IMAGE parameter(s) */ if ((!prefs.nwimage_name && ((prefs.weight_type[0]!=WEIGHT_FROMBACK && prefs.weight_type[0]!=WEIGHT_NONE) || (prefs.weight_type[1]!=WEIGHT_FROMBACK && prefs.weight_type[1]!=WEIGHT_NONE))) || (prefs.nwimage_name<2 && prefs.weight_type[0]!=WEIGHT_FROMBACK && prefs.weight_type[0]!=WEIGHT_NONE && prefs.weight_type[1]!=WEIGHT_FROMBACK && prefs.weight_type[1]!=WEIGHT_NONE && prefs.weight_type[0]!=prefs.weight_type[1])) error(EXIT_FAILURE, "*Error*: WEIGHT_IMAGE missing",""); if (prefs.nwimage_name && prefs.nwimage_name<2) prefs.wimage_name[1] = prefs.wimage_name[0]; if (prefs.nwimage_name==2 && prefs.nweight_type==1) prefs.nweight_type = 2; /*-- If detection-only interpolation is needed with 1 Weight image... */ /*-- ...pretend we're using 2, with only one being interpolated */ if (prefs.nweight_type==1 && prefs.nwimage_name && prefs.wimage_name[1]==prefs.wimage_name[0] && prefs.interp_type[0]==INTERP_VARONLY ) { prefs.nweight_type = 2; prefs.weight_type[1] = prefs.weight_type[0]; prefs.weight_type[0] = WEIGHT_FROMINTERP; prefs.wimage_name[1] = prefs.wimage_name[0]; prefs.interp_type[1] = INTERP_NONE; prefs.dweight_flag = 1; if (prefs.nweight_thresh<2) { prefs.nweight_thresh = 2; prefs.weight_thresh[1] = prefs.weight_thresh[0]; } } } /*------------------------------ Catalogue ---------------------------------*/ if (!strcmp(prefs.cat_name, "STDOUT")) prefs.pipe_flag = 1; if ((str=strrchr(prefs.filter_name, '/'))) strcpy(thecat.filter_name, str+1); else strcpy(thecat.filter_name, prefs.filter_name); if ((str=strrchr(prefs.prefs_name, '/'))) strcpy(thecat.prefs_name, str+1); else strcpy(thecat.prefs_name, prefs.prefs_name); if ((str=strrchr(prefs.nnw_name, '/'))) strcpy(thecat.nnw_name, str+1); else strcpy(thecat.nnw_name, prefs.nnw_name); if ((str=strrchr(prefs.image_name[prefs.nimage_name-1], '/'))) strcpy(thecat.image_name, str+1); else strcpy(thecat.image_name, prefs.image_name[prefs.nimage_name-1]); sprintf(thecat.soft_name, "%s %s", BANNER, VERSION); return; } /********************************* endprefs *********************************/ /* Mostly free memory allocate for static arrays. */ void endprefs(void) { int i; for (i=0; i<prefs.nfimage_name; i++) free(prefs.fimage_name[i]); for (i=0; i<prefs.nwimage_name; i++) free(prefs.wimage_name[i]); for (i=0; i<prefs.npsf_name; i++) free(prefs.psf_name[i]); for (i=0; i<prefs.ncheck_name; i++) free(prefs.check_name[i]); return; }
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